PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF106100060CFD_t1
Common NameTRAES_3BF106100060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 260aa    MW: 27777.7 Da    PI: 7.4241
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF106100060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-212471249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ie++  rqv fskRr+g++KKA+EL vLC+aeva ++fs+ gk + +
  TRAES3BF106100060CFD_t1 24 KIESEEARQVCFSKRRAGLFKKASELAVLCGAEVAAVVFSPAGKAFSF 71
                             69*****************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.7031575IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-341574IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-281585IPR002100Transcription factor, MADS-box
CDDcd002651.47E-391683No hitNo description
PRINTSPR004046.1E-201737IPR002100Transcription factor, MADS-box
PfamPF003198.3E-262471IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-203752IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-205273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0009960Biological Processendosperm development
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAMATATAPR RRASMGRQKI EIRKIESEEA RQVCFSKRRA GLFKKASELA VLCGAEVAAV  60
VFSPAGKAFS FGHPSVEAIL DRFVPSAAQQ PGAVVPGAGL GAAGDRNLAE LNRQYGELRT  120
QLEAEKARKE RAEEAMAKER AAGNQMAAWL DADLRDMGEE ELMAFAAALV EVQAAVSERA  180
NQVLQEALNV GRSRSASRML QAPPPPQQQQ QLAGGGTFEF GNTSTNAGME IQQMLLAMPP  240
PPPPGFAPGM DMVQHGGFPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-161587173MEF2 CHIMERA
6byy_B3e-161587173MEF2 CHIMERA
6byy_C3e-161587173MEF2 CHIMERA
6byy_D3e-161587173MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185579.11e-137agamous-like MADS-box protein AGL61
TrEMBLA0A077RWB20.0A0A077RWB2_WHEAT; Uncharacterized protein
TrEMBLA0A446QJ230.0A0A446QJ23_TRITD; Uncharacterized protein
STRINGEMT324811e-141(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-31AGAMOUS-like 61
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]