PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF114300150CFD_t1
Common NameTRAES_3BF114300150CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 480aa    MW: 49596.1 Da    PI: 5.6955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF114300150CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-0583105123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C + F + s  + H+r+H
  TRAES3BF114300150CFD_t1  83 FPCPICRREFASGSAVHGHMRVH 105
                              89********************6 PP
2zf-C2H214.50.00011320342123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k+F++  +L  H+r+H
  TRAES3BF114300150CFD_t1 320 HPCKHCSKVFNSGVQLGGHMRMH 342
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.11883113IPR007087Zinc finger, C2H2
PfamPF138942.9E-483106No hitNo description
SMARTSM003550.01583105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085106IPR007087Zinc finger, C2H2
SMARTSM003552.8266290IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268290IPR007087Zinc finger, C2H2
PfamPF139120.022273291IPR007087Zinc finger, C2H2
SuperFamilySSF576675.29E-6317347No hitNo description
PROSITE profilePS5015710.388320347IPR007087Zinc finger, C2H2
PfamPF139123.0E-8320344IPR007087Zinc finger, C2H2
SMARTSM003550.014320342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280322342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MGTDLADQAR PGRRRRPRPD LEEGEFVADD DDGGRPEIKV RRLEDILDGD ALPSPTPSRE  60
RDSDGTVSDM DADDEGLARE PGFPCPICRR EFASGSAVHG HMRVHHPHGG GRQGIVVSGG  120
WAVTGKRGYV GGRSVYPQEE EEEEGVGDSA SMTTAVAEPV IDATPIAFAS STSSAEPNPP  180
STAIVLAADN PPNQVAVHPS CSPQCGAGHQ PAAPQAVVAQ PQPALAQGHL AGAAPPQLFA  240
SPPQAVARHV RRAAPSPTSR DEQGRWVCKE EGCYQRFDSH QGLGGHMAAH KMRKNNEAAA  300
AAAAAGLNPC LASARPAKLH PCKHCSKVFN SGVQLGGHMR MHYDGKVIAR RRRVEAPVSA  360
RELAAALFSA QASPETSTSA SPPDGLALSL SPPADGPDEL ALSLSLSPPA TAATEVAQPG  420
IISPALSGGS EPAPAPVAPG VFRIFGVNIA VAPPAAAGEE VFSAVTETDQ SSAASTNIQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194946.10.0uncharacterized protein LOC109780773
TrEMBLA0A077S6D60.0A0A077S6D6_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-10C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]