PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF123100010CFD_t1
Common NameTRAES_3BF123100010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 226aa    MW: 25615.4 Da    PI: 9.4765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF123100010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06123146226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              k  lC ff + G+C+ G +CkF+H+
  TRAES3BF123100010CFD_t1 123 KSILCEFFKA-GQCQKGFKCKFSHD 146
                              6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-6121146IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272121148IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4123146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5123147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPPKKAAASK ADVAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQSVQPK PDPTKTAAKA  60
RGTLRSKPSI PSSDVCSSDL FFLFVDVDAQ KKKEEEKARE KELNDLFKVA VSQPKVPVGV  120
DPKSILCEFF KAGQCQKGFK CKFSHDLNVQ RKGEKIDIYS DKRDGEEEDT MDDWDQETLE  180
KVIASKNAEY QQNKPTDIVC TIPKLLYTFF KHFSLYDVSL STFILL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507661e-165AK250766.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159449.13e-96zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-87C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A077RHJ91e-163A0A077RHJ9_WHEAT; Uncharacterized protein
TrEMBLA0A446Q4I21e-163A0A446Q4I2_TRITD; Uncharacterized protein
STRINGEMT024501e-106(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]