PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF127400030CFD_t1
Common NameTRAES_3BF127400030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 196aa    MW: 20638.9 Da    PI: 6.5036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF127400030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00136284123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C+k+F++   L  H  +H
  TRAES3BF127400030CFD_t1 62 FECKTCSKRFTSFQALGGHRTSH 84
                             89**********99998888777 PP
2zf-C2H211.80.00072111133123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C  Cg  Fs    L  H+r+H
  TRAES3BF127400030CFD_t1 111 HECAVCGLEFSMGQALGGHMRRH 133
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-65986No hitNo description
PfamPF139124.0E-116184IPR007087Zinc finger, C2H2
SMARTSM003550.246284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246289IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-46285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-6109138No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4109138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-11110135IPR007087Zinc finger, C2H2
SMARTSM003550.89111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045926Biological Processnegative regulation of growth
GO:0080134Biological Processregulation of response to stress
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTLTREEAHE SKEMESLRVH ADALLSLASP AASSTATAGS KPVTAATTTV AGRRALAAEG  60
VFECKTCSKR FTSFQALGGH RTSHTRLQAR MLLHDQTADQ GAAERDRARV HECAVCGLEF  120
SMGQALGGHM RRHRGEAPPG PSTSSAAVHG DASSGGTQQQ EVMPDLNYPP MDDCGGDGQE  180
TSADRSSGHQ LLDLLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00041PBMTransfer from AT3G46090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174851.11e-110zinc finger protein ZAT11-like
TrEMBLA0A077RVZ21e-139A0A077RVZ2_WHEAT; Uncharacterized protein
TrEMBLA0A446Q4T11e-139A0A446Q4T1_TRITD; Uncharacterized protein
STRINGBRADI2G54500.12e-75(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.17e-24C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]