PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF130100030CFD_t1
Common NameTRAES_3BF130100030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 257aa    MW: 27692.5 Da    PI: 8.3874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF130100030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-1069114454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h+e+ErrRR riN  +  Lr+++P       k ++Ka+ L ++v+ +k+L
  TRAES3BF130100030CFD_t1  69 VHSEAERRRRVRINAHLTALRRMIPDT-----KQMDKAALLARVVDQVKHL 114
                              59************************9.....67***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.08765114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1268126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1369136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-869114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-1070116No hitNo description
SMARTSM003533.1E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.0E-4153197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLGLMAAPCQ SPQAGNKLYD ECDPTVHGDR VLLPRQASSA SPAGPPEVST TSSSTGSGRS  60
ATEARALKVH SEAERRRRVR INAHLTALRR MIPDTKQMDK AALLARVVDQ VKHLKRRAGE  120
AAQQTPAVPP ETDEVSIEFC TGDDDSRLYM KASVSCDDRP DLVAGLIQAL HGLRLRTVRA  180
EVTSLGGRVQ HVFTLCKEED EEGSAAAGLA GLTSLKEAAR LALARVASPE LVCGGSPFQF  240
QSKRQRILES HYSIMSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170465.11e-143putative transcription factor bHLH107 isoform X1
RefseqXP_020170466.11e-143putative transcription factor bHLH107 isoform X1
TrEMBLA0A446PGA60.0A0A446PGA6_TRITD; Uncharacterized protein
STRINGTRIUR3_07421-P11e-147(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-32bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]