PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF154600030CFD_t1
Common NameTRAES_3BF154600030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21946.3 Da    PI: 9.1161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF154600030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.9e-111151343
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                             i ++  r+ t  kR  gi KKA ELSvLC+++ + i++ + 
  TRAES3BF154600030CFD_t1 11 IASDPTRKATARKRDMGIKKKAGELSVLCGVDTCYIMYREG 51
                             778889999****************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.082152IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-9161IPR002100Transcription factor, MADS-box
CDDcd002663.78E-23286No hitNo description
SuperFamilySSF554551.09E-18396IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-101152IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MARKKVAIEY IASDPTRKAT ARKRDMGIKK KAGELSVLCG VDTCYIMYRE GGASPPEVYP  60
SVPEAMRVID RFRAMPELDQ CKKKMDGEDY VRERIAKIQE QLRRAQRDNR QLETTLLLHD  120
ALVGRRQGLA GVAIEQLVSL GWMAESYVKK VSDCIAYRSM QQQPQPQLQH AGVQAEPPHY  180
AAAVADVEAP PHQQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190655.11e-132agamous-like MADS-box protein AGL80
TrEMBLA0A077RQY41e-140A0A077RQY4_WHEAT; Uncharacterized protein
TrEMBLA0A446PIW21e-140A0A446PIW2_TRITD; Uncharacterized protein
STRINGEMT269051e-132(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]