PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF156400030CFD_t1
Common NameTRAES_3BF156400030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 196aa    MW: 21652.5 Da    PI: 9.4444
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF156400030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer80.91.6e-252381259
              ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                             e+v+Y eC +Nh  + Ggh+vDGCgE+mp  +++ ++a++ kCaACgC RnFHR++++ 
  TRAES3BF156400030CFD_t1 23 EEVTYMECGRNHGLASGGHVVDGCGEWMPLGDHNpADASSYKCAACGCDRNFHRKSTTR 81
                             5799**************************999999*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.7E-212579IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-132577IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-202678IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.5492778IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.2E-11144190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDVKYLNGGS VKKVKQAVAP GVEEVTYMEC GRNHGLASGG HVVDGCGEWM PLGDHNPADA  60
SSYKCAACGC DRNFHRKSTT REGTEYDDKL SVYRPLQPPP AYHPARVAQQ PPPYISCARH  120
SRPLGALQIQ RLTVQRSPVT APPPHGVMSE RKRSRTMFTA DQKLRMQELS EHLGWSLQKR  180
DKDIIEARAR TSSGTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181134.16e-79zinc-finger homeodomain protein 9-like
TrEMBLA0A077RY081e-145A0A077RY08_WHEAT; Uncharacterized protein
STRINGEMT264535e-83(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-25homeobox protein 22
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]