PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF171600010CFD_t1
Common NameTRAES_3BF171600010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 207aa    MW: 22490.3 Da    PI: 5.7907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF171600010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-1950100256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  TRAES3BF171600010CFD_t1  50 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 100
                              6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.48750107IPR001471AP2/ERF domain
CDDcd000188.91E-1750108No hitNo description
SuperFamilySSF541712.88E-2250108IPR016177DNA-binding domain
SMARTSM003802.3E-3650113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3250108IPR001471AP2/ERF domain
PRINTSPR003673.9E-115162IPR001471AP2/ERF domain
PfamPF008471.1E-125199IPR001471AP2/ERF domain
PRINTSPR003673.9E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MCGGAIIYDY IPAHRRRVST ADFWPDADHS DAYSAAPDKA PRAKRGRTNQ YRGIRQRPWG  60
KWAAEIRDPV KGVRVWLGTY PTAEAAARAY DRAARRIRGA KAKVNFPNEI LVSAPAHEAS  120
CTMAAAPPAA VLPSPKKEEE GEGLEPAACS CEEVKALSEE LMAYENYMSF LGVPYMEGGA  180
AAAPAAEEAP AELWSFEDSY YPGPLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2250110566ATERF1
3gcc_A3e-2250110566ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163333.11e-106ethylene-responsive transcription factor ERF071-like
TrEMBLA0A077S4I41e-147A0A077S4I4_WHEAT; Ethylene response factor
TrEMBLA0A446UGV11e-147A0A446UGV1_TRITD; Uncharacterized protein
STRINGTraes_5BL_98D063967.21e-105(Triticum aestivum)
STRINGTraes_5DL_41E3B1B23.11e-105(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-27ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]