PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF176500010CFD_t1
Common NameTRAES_3BF176500010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 155aa    MW: 16964.3 Da    PI: 8.4889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF176500010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19655255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ + g
  TRAES3BF176500010CFD_t1  6 RYRGVRQRH-WGSWVSEIRHP-----LmkTRIWLGTYETAEDAARAYDEAARLMSG 55
                             69******9.**********7.....335**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-28563No hitNo description
SuperFamilySSF541711.37E-20664IPR016177DNA-binding domain
PfamPF008476.5E-12653IPR001471AP2/ERF domain
SMARTSM003803.3E-36669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-34664IPR001471AP2/ERF domain
PROSITE profilePS5103221.443663IPR001471AP2/ERF domain
PRINTSPR003675.0E-11718IPR001471AP2/ERF domain
PRINTSPR003675.0E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPKLQRYRGV RQRHWGSWVS EIRHPLMKTR IWLGTYETAE DAARAYDEAA RLMSGPAART  60
NFPSTNGVAA AGGCLSATLR AKLEKCCMST PAPVQNVEAA KAARTGGGAA RRNRVEDVVK  120
RVDEEEECIE EMIRELTHYG SVEIVAPSAC SSSVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16363263ATERF1
3gcc_A1e-16363263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681128e-42EU968112.1 Zea mays clone 314589 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146280.11e-87ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-46ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A077RFD81e-110A0A077RFD8_WHEAT; Uncharacterized protein
TrEMBLA0A446MT881e-110A0A446MT88_TRITD; Uncharacterized protein
STRINGTraes_2BL_5BA37F95E.11e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-28ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]