PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF231500020CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 240aa    MW: 25359.3 Da    PI: 8.3235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF231500020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05107129123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  TRAES3BF231500020CFD_t1 107 FVCEICHKGFQRDQNLQLHRRGH 129
                              89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.12E-5105130No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5106129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPPMACGATG TGECTGSFSS VSSTVEGLGE EFRLPYHGKP PFLAGSPPEI REDDGDLRLV  60
IAGTSDSLST PPAATKKKKK RSLPGTPDPS AEVIALSPRT LMATNRFVCE ICHKGFQRDQ  120
NLQLHRRGHN LPWKLRQRGA EGGAAPRKRA AFGAYDGVVG FGVGGLMPGQ LYNDGANGGT  180
TRNAGPAVSG ADNPMDDERR RAAAGDDVRV VDYMGVEHQR TSYGSVSSAS PFADYTGPWP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666524e-88BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196182.17e-73protein indeterminate-domain 2-like
TrEMBLA0A446QD601e-174A0A446QD60_TRITD; Uncharacterized protein
STRINGTraes_3B_850142A99.21e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2461645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-34C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]