PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF265800070CFD_t1
Common NameTRAES_3BF265800070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 114aa    MW: 12697.4 Da    PI: 4.7629
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF265800070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-087397126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             +ktelC+ +   G C+ G+rC+FaHg
  TRAES3BF265800070CFD_t1 73 QKTELCNKWEG-GACSCGGRCRFAHG 97
                             69*******98.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-969100IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-57298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2497299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.88E-672100IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-57397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDFFRILENA FSVWFRLNCC PTVPAQPPNV LCLGRAFFQL LYWFSLHTDQ AGVDEAKGDG  60
EVVELEAYRQ GTQKTELCNK WEGGACSCGG RCRFAHGLQD DGFLISLTNQ GVQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-106HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077S0M52e-79A0A077S0M5_WHEAT; Uncharacterized protein
TrEMBLA0A446Q1F12e-79A0A446Q1F1_TRITD; Uncharacterized protein
STRINGTraes_3B_9441F2297.16e-40(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.18e-14C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]