PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_00734-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 467aa MW: 51343.8 Da PI: 6.4068

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_00734-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	21.2	6.4e-07	301	321	4	24
G2-like 4 lrWtpeLHerFveaveqLGGs 24 lrWt +LH+ Fveave GG+ TRIUR3_00734-P1 301 LRWTDDLHKIFVEAVEYQGGP 321 89*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00081	1.3E-10	6	23	IPR002347	Short-chain dehydrogenase/reductase SDR
SuperFamily	SSF51735	8.65E-39	6	222	IPR016040	NAD(P)-binding domain
CDD	cd05233	2.53E-46	7	222	No hit	No description
Pfam	PF00106	7.6E-31	7	188	IPR002347	Short-chain dehydrogenase/reductase SDR
Gene3D	G3DSA:3.40.50.720	5.3E-43	7	221	IPR016040	NAD(P)-binding domain
PRINTS	PR00081	1.3E-10	96	107	IPR002347	Short-chain dehydrogenase/reductase SDR
PROSITE pattern	PS00061	0	160	188	IPR020904	Short-chain dehydrogenase/reductase, conserved site
PRINTS	PR00081	1.3E-10	173	192	IPR002347	Short-chain dehydrogenase/reductase SDR
Gene3D	G3DSA:1.10.10.60	1.5E-4	298	320	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015996	Biological Process	chlorophyll catabolic process
GO:0055114	Biological Process	oxidation-reduction process
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding
GO:0034256	Molecular Function	chlorophyll(ide) b reductase activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVASDLKK EFGEQHVWVP 60 TAELLGPYIF IQGTVCDVRE GKDVKALVDF ARDKLEYIDI WINNAGSNAY SYKPLVETSD 120 EALIEVITTN TLGLMLCCRE AINMMWNQPR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV 180 VHLTKSLQPG MVTTDLLMSG ATTKQAKFFI NILAETPDVV ADYLVPNIRE IPTKQSMKPT 240 YIRFLTGLKA YSRIFSRIAF GARRNKMMSN GKPTENSDSS YMSGILASCL LRAMQPTRSL 300 LRWTDDLHKI FVEAVEYQGG PYGEANCGEA ENGSYGSHRP DNLEHKKPPP STSCPLAALH 360 QLILRVFVPP CRISTLGFAL PCQRYREKCN LGAESPRDVL GTASPSKAGD NVTSEAETVV 420 DNDAAMNLTG MEMATYLLMD DTEMVDTAFS ADQLQMMEKE LMNAIQA

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVASDLKK EFGEQHVWVP  60
TAELLGPYIF IQGTVCDVRE GKDVKALVDF ARDKLEYIDI WINNAGSNAY SYKPLVETSD  120
EALIEVITTN TLGLMLCCRE AINMMWNQPR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV  180
VHLTKSLQPG MVTTDLLMSG ATTKQAKFFI NILAETPDVV ADYLVPNIRE IPTKQSMKPT  240
YIRFLTGLKA YSRIFSRIAF GARRNKMMSN GKPTENSDSS YMSGILASCL LRAMQPTRSL  300
LRWTDDLHKI FVEAVEYQGG PYGEANCGEA ENGSYGSHRP DNLEHKKPPP STSCPLAALH  360
QLILRVFVPP CRISTLGFAL PCQRYREKCN LGAESPRDVL GTASPSKAGD NVTSEAETVV  420
DNDAAMNLTG MEMATYLLMD DTEMVDTAFS ADQLQMMEKE LMNAIQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuy_A	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_B	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_C	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_D	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_E	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_F	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_G	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
4iuy_H	2e-15	7	235	30	236	Short chain dehydrogenase/reductase
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Functional Description ? help Back to Top
Source	Description
UniProt	Required for chlorophyll b degradation.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by dark treatment. {ECO:0000269\|PubMed:18778405}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369003	1e-177	AK369003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181142.1	1e-175	chlorophyll(ide) b reductase NOL, chloroplastic-like
Swissprot	Q84ST4	1e-167	NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBL	M7YTL3	0.0	M7YTL3_TRIUA; Chlorophyll(Ide) b reductase NOL, chloroplastic
STRING	TRIUR3_00734-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10938	12	12

Publications ? help Back to Top
Kusaba M, et al. Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence. Plant Cell, 2007. 19(4): p. 1362-75 [PMID:17416733] Sato Y, et al. Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice. Plant J., 2009. 57(1): p. 120-31 [PMID:18778405]