PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_00919-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 782aa    MW: 88849.6 Da    PI: 7.0756
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_00919-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.4e-1833117191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY++YA ++GF v+++ks+ + + g + +  +vC+++g+ +e+        + r++ +t+C+a+++ +++ dg  ++t+++l+HnH+l+p
  TRIUR3_00919-P1  33 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGMLHLTDVSLDHNHPLNP 117
                      6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-1633117IPR004330FAR1 DNA binding domain
PfamPF105516.7E-26222314IPR018289MULE transposase domain
PROSITE profilePS509669.371501537IPR007527Zinc finger, SWIM-type
SMARTSM005750.0041512539IPR006564Zinc finger, PMZ-type
PfamPF044345.0E-5514533IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
XELDAAADRA PPYGDDRTPR DGMVFKSYEE VLNFYKRYAL RTGFGVCVKK SSFTKAGLCR  60
RLLLVCNRWG NGKEDACYQA RPTAKTNCQA TVVARLWGDG MLHLTDVSLD HNHPLNPSAA  120
RFLRCYKTLP SGMSKDLVVR AARGECATSG GDVEAPPMFD DWGRLKIREG DVQAINGFFA  180
EMQAKQPNFF YVMDFYVEGH LRSVLWADSR SREAYQYFSD AIWVDTTCLR SKFNVPLVLF  240
LGVNHHGQLV LLGCGLLSDE STESFLWLFK AWLTCMKGRL PGAMITDESV AIKAAVREVF  300
PKTRHRISDW HIVRSIAEKL GELPEYESIK VQMEAVIYGS LKDDQFETRW KNLINRFSLQ  360
DNEWIIFLYE NRHLWVPSFL KDAFWAGLSV NHRESPGAFF DGSVSHETTL VSFLSNYMIL  420
VQYKHKMEQQ DDFESLTSGR VLVSKFPMEE QISKLYTLNM FVKFQDELKS TLDCQVQQVS  480
PSSFVVIDLA EQGTGLVTRK YEVVHCMETN RMECNCGLFQ FSGIVCRHAL SVLKWQQVYD  540
IPPCYVLNRW RSDFKQLHAL DNPLKDPLVS SNHVERYDHI SLQCLRLVEI GMVSDDKYQH  600
ALKLISDMKR TLLDDNLCRE LEQKMSPPER AIVVNGDSHA QPGSSEGGPA KKRRGRPPKK  660
SKEISAESVS NRCGNKESLL VSSDVSQKGA LHSSSTASNL GTHVRAHGVD DLMEEVNANE  720
VSFESRYGVQ SSHPNHYGDQ LHPGHTLQFG QHMPSAEQSR GVEWVYPTIY QDDQVPYGRR  780
TS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178274.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLT1L8Y30.0T1L8Y3_TRIUA; Uncharacterized protein
STRINGTRIUR3_00919-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-119FAR1-related sequence 6