PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01040-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 746aa    MW: 81756.2 Da    PI: 6.605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01040-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-175195147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  TRIUR3_01040-P1 51 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 95
                     789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-154599IPR009057Homeodomain-like
PROSITE profilePS5129422.05646100IPR017930Myb domain
TIGRFAMsTIGR015571.4E-154998IPR006447Myb domain, plants
SMARTSM007171.6E-145098IPR001005SANT/Myb domain
PfamPF002492.3E-145194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-105191IPR009057Homeodomain-like
CDDcd001673.06E-115396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MAVGEERDAM DSSRMPIGKG LSVDVAMEPN EEGMGEHPVK PRKPYTITKQ REKWTEEEHE  60
KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGAKIEIE IPPPRPKRKP  120
LHPYPRKRAN SCNGANPANG QSKLAQISSS SGSDQENGSP VSVLSAMQSD AFGSSMSNPS  180
SRSTSPESSD EENNVPPMVS EEEGQQTGID QSHKEADQEN IDMGTSEEDS SDEVQVTSVK  240
LFGKTVVIPD PRKICSPDTG SGHENGEQTS QSSNIGTSQA PLAVEIPTHT KGGQTSQSSN  300
KATSQAPLAV EVPTYTNGEQ ISEFSYKATS QAPLAGEVPA YTNGEQISEF SYKATSQAPL  360
AVEVPTYTNG EQISEFSYKA TSQAPLAVEI QAYAAPPSAW VLPYNSFPLH FGESAEARIA  420
RLHMWWPYYG FPMVHPSGPS AVAHNGKVTD ESEAAKSPPV ESSSDFVDNT QATASKQWKV  480
LESLGTAQAP PSASNFQLKP STNSAFVRVK PIISSGDEPE EPVPHIPLLH CILRFYLHIE  540
IGGGLVREMR VVSCLRLVMS RAQVVADANI SCEEPKWKWI AKGFISTKQM KVKLLDGEGL  600
HILMGMPCLA YLQLKVSNSA GVLTVSSNRF KLLEVFDYSI WCGEETGIKF AAGAMTALRW  660
HNLSWSATQV QLRYGDGSNI GIEHLASLVY LRVQTFCDDA TREEVLKMRC LRVMRRGQRR  720
GTGAGKQIFG KCKICMLQQP IELNRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519260.0JF951926.1 Triticum aestivum clone TaMYB43 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180978.10.0protein LHY-like isoform X1
TrEMBLM7Z9890.0M7Z989_TRIUA; Protein LHY
STRINGTRIUR3_01040-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.13e-35MYB_related family protein