PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01058-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 107aa    MW: 11881.5 Da    PI: 7.2746
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01058-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213961123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg  F     L  H+r+H
  TRIUR3_01058-P1 39 HECHICGLGFEMGQALGGHMRRH 61
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.95E-73565No hitNo description
Gene3DG3DSA:3.30.160.604.9E-43664IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.8273966IPR007087Zinc finger, C2H2
PfamPF139127.2E-113964IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVALGGHRTS HLRGRHGLEL GVGVARAIKE RKKQEEKQHE CHICGLGFEM GQALGGHMRR  60
HREEMALRGG DDGDQWVWRG VGLPDQEAVA HQAAANYEPP VLLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082241e-178EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.17e-67zinc finger protein ZAT8-like
TrEMBLB0ZYZ09e-71B0ZYZ0_WHEAT; C2H2 zinc finger protein
TrEMBLM8AZJ68e-71M8AZJ6_TRIUA; Uncharacterized protein
STRINGTRIUR3_01058-P11e-71(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-08C2H2 family protein