PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01063-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 178aa    MW: 19286.8 Da    PI: 10.935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01063-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000885981123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg+ F +   L  H  +H
  TRIUR3_01063-P1 59 FVCNTCGRAFASFQALGGHRTSH 81
                     89*********999998888777 PP
2zf-C2H214.88.4e-05109131123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F +   L  H+r+H
  TRIUR3_01063-P1 109 HECSICGMGFETGQALGGHMRRH 131
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.600.0015482IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.725986IPR007087Zinc finger, C2H2
SuperFamilySSF576675.32E-959131No hitNo description
PfamPF139121.5E-95983IPR007087Zinc finger, C2H2
SMARTSM003550.365981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4107134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.4E-11109134IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492109136IPR007087Zinc finger, C2H2
SMARTSM003550.019109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGAGMKRTRN KEVLSLALAL TTDSSTSSTT SADSAGSPAK KARRRERGAM VATSGEGEFV  60
CNTCGRAFAS FQALGGHRTS HLRGRHELEL GVGIARAIRE RRRRENKQHE CSICGMGFET  120
GQALGGHMRR HREEMALRGG GDDDDQWVWR SVALLPGQVV TGQQATANQP PVLLKLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198430.13e-95zinc finger protein ZAT12-like
TrEMBLM7ZTS51e-126M7ZTS5_TRIUA; Uncharacterized protein
STRINGTRIUR3_01063-P11e-127(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-19C2H2 family protein