PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01065-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 169aa    MW: 17917.2 Da    PI: 9.0651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01065-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000315779123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg+ F++   L  H  +H
  TRIUR3_01065-P1 57 FVCKTCGRAFPSFQALGGHRTSH 79
                     89**********99998888777 PP
2zf-C2H2157.3e-05107129123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  TRIUR3_01065-P1 107 HECHICGLGFETGQALGGHMRRH 129
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.185779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4085784IPR007087Zinc finger, C2H2
PfamPF139121.1E-105781IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-857129No hitNo description
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003550.059107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494107134IPR007087Zinc finger, C2H2
PfamPF139127.9E-11107132IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGAGMKRGRE EEPTVSLALS LSPDSSTSSV TSADSGAGAQ AKRKRGAVVA TSGEGEFVCK  60
TCGRAFPSFQ ALGGHRTSHL RGRHGLELGV GVARAIKERK RREEKQHECH ICGLGFETGQ  120
ALGGHMRRHR EQMAPRGADD RGVALLPDQD VAGHQAAADQ PPVLLELFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082246e-80EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198432.11e-101zinc finger protein ZAT12-like
TrEMBLM8AND91e-117M8AND9_TRIUA; Uncharacterized protein
STRINGTRIUR3_01065-P11e-118(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-19C2H2 family protein