PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_01157-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 177aa MW: 18942.5 Da PI: 9.683

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_01157-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	9e-08	20	82	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC..............TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas...........kapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P++s + ++ + + L A YIk+L+ TRIUR3_01157-P1 20 ERKDVEKNRRLHMKGLCLKLSSLVPPSSahysstsssppSSNKDAATQLDQLDSAAAYIKQLR 82 56899*******************888****96666666**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.845	16	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-10	18	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-8	18	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	20	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKGRRQSMVP DGGCSASKME RKDVEKNRRL HMKGLCLKLS SLVPPSSAHY SSTSSSPPSS 60 NKDAATQLDQ LDSAAAYIKQ LRPRIDHLKR RKQAALTGGC SSSVSAGDYK GAPSTSTALP 120 VIEVRCQDGS ALDVALASEA GRPFRLHEVI AVLEQEGAEV VSASFSVVGD KIFYTYK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	2e-95	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183666.1	1e-95	uncharacterized protein LOC109769325
TrEMBL	M7YTB6	1e-126	M7YTB6_TRIUA; Uncharacterized protein
STRING	TRIUR3_01157-P1	1e-126	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-15	bHLH family protein