PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_01225-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 346aa MW: 37669.7 Da PI: 7.1779

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_01225-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	140	210	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C....................TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as.................kapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + ++ +K + L +++Y+k+L+ TRIUR3_01225-P1 140 QEHVIAERKRREKLQQQFVSLATIIPGiKKvrlcehqvpagcslnvsHCHCIQTDKLSLLGSTIDYVKQLE 210 5799*********************7779***********5555555**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.941	137	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-5	140	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-12	140	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-11	141	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-5	142	214	No hit	No description
SMART	SM00353	1.1E-6	143	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
QWLMSCQQEE ELVYIYQQEG GPVPLPLPGM EQQFAEPPSL ADHQERYYTP PLPIPSSNPS 60 RSSNFPSFGA SSPLPNLPFG PAPVENELGQ LSQPPSSNFL SFGSALNFSE GACWRHNGAQ 120 GTMQQLQVPQ RRGRAPANAQ EHVIAERKRR EKLQQQFVSL ATIIPGIKKV RLCEHQVPAG 180 CSLNVSHCHC IQTDKLSLLG STIDYVKQLE EKVKALDEQG SRRSSESMVF HSKCRISAAD 240 NGAAGPSGSG SGHSSPDIEA SILGNTALLS IWCRGRKGVL VMALSELENQ GLSIISTNIV 300 PFTNSYLNIT ITAKAMAPLP SYIIEEGFSS TVELVKNLKM ALRSFN

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

QWLMSCQQEE ELVYIYQQEG GPVPLPLPGM EQQFAEPPSL ADHQERYYTP PLPIPSSNPS  60
RSSNFPSFGA SSPLPNLPFG PAPVENELGQ LSQPPSSNFL SFGSALNFSE GACWRHNGAQ  120
GTMQQLQVPQ RRGRAPANAQ EHVIAERKRR EKLQQQFVSL ATIIPGIKKV RLCEHQVPAG  180
CSLNVSHCHC IQTDKLSLLG STIDYVKQLE EKVKALDEQG SRRSSESMVF HSKCRISAAD  240
NGAAGPSGSG SGHSSPDIEA SILGNTALLS IWCRGRKGVL VMALSELENQ GLSIISTNIV  300
PFTNSYLNIT ITAKAMAPLP SYIIEEGFSS TVELVKNLKM ALRSFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	150	ERKRRE
2	146	151	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197262.1	1e-169	transcription factor bHLH18-like
TrEMBL	T1L9S3	0.0	T1L9S3_TRIUA; Uncharacterized protein
STRING	TRIUR3_01225-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-26	bHLH family protein