PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01234-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 290aa    MW: 30621.3 Da    PI: 4.5262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01234-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05267290123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      + C+ C+++F + s L++H +  H
  TRIUR3_01234-P1 267 HACKSCSRTFGSASALQSHEKAkH 290
                      67*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.115267290IPR007087Zinc finger, C2H2
PROSITE patternPS000280269290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
GVEVKPGQTV YCDPGEGRVV HLTQVALGET EKGSAGILVS AKIGDQKGAI GTLSAENHPQ  60
IPCDLIFEKQ FELSHSSKTA SVFACGYKIF VPICESDSSE FDSSESDSSE DEVETVNNQV  120
TNPIVGNVAK PPTTKGDKKV TDNLDSSEDD SDFSSSDSDD PEDGEKMVAA ETALETPGSD  180
DTSNKEDTSD QEDKNTPKPE VGTKRAAETA LETPAPDKKA KIETPSGQDT DDRKTVHVAT  240
PHPAKQADKA PGNSKPNLKS KYVGGAHACK SCSRTFGSAS ALQSHEKAKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-100HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163860.11e-121histone deacetylase HDT3-like
TrEMBLT1L9T20.0T1L9T2_TRIUA; Uncharacterized protein
STRINGTRIUR3_01234-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-21histone deacetylase 3