PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01454-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 239aa    MW: 25697.8 Da    PI: 9.1282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01454-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-111642041055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR++iN+++  L+ l+P+      +K++ +++Le+Av+YIk +q
  TRIUR3_01454-P1 164 QKRREKINERLKVLQNLIPNG-----TKVDISTMLEEAVHYIKFMQ 204
                      89*****************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.09154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-12163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8164204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.11E-12164208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAGNFFVAPE EQIMADPAGF MVDLNLQFDD QDDGAGTSAA ACKRKFGDQN GTQSDAVTAP  60
KKKARSTAPP VQRKGKSSAQ PKKASKGSCS RGAQEESNGE ATNHVQSSSN YLSDEEGSLE  120
MTSCSNMSSA SKKTSSSRGD HGGGAKARAG RGAATDPQSL YARQKRREKI NERLKVLQNL  180
IPNGTKVDIS TMLEEAVHYI KFMQLQIKLL SSDDMWMFAP IAYNGFNVGL DLKIAPPQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965PKKKARS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163011.11e-143transcription factor bHLH85-like
SwissprotQ7XHI94e-49BH084_ARATH; Transcription factor bHLH84
SwissprotQ84WK05e-49BH085_ARATH; Transcription factor bHLH85
TrEMBLM7ZAB91e-178M7ZAB9_TRIUA; Transcription factor bHLH85
STRINGTRIUR3_01454-P11e-178(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]