PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01515-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 214aa    MW: 23173.9 Da    PI: 7.6413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01515-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3901.8e-2841128184
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+kv tpsdv+k++rlv+pk++ae++     +++ ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+   ++
  TRIUR3_01515-P1  41 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSTDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTQHYHH 128
                      89***************************966777899********************************************966664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3829123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2738123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-2539123No hitNo description
PfamPF023621.6E-2541127IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5941143IPR003340B3 DNA binding domain
SMARTSM010193.8E-1741141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEFTAIRASA AAAGGCSSPP PAADHKAEEE AAGPVEKEHM FDKVVTPSDV GKLNRLVIPK  60
QHAEKYFPLD ASSTDKGLLL SFEDRAGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA  120
GDTQHYHHQH QSLVLESVPV RMAAAPGHPE PSAVATSGSK RVRLFGVNLE CAADAEEDFS  180
GHGRTATTAL QLLSPASSSS SSCGKARCSL NLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-5236128395B3 domain-containing transcription factor NGA1
5os9_B3e-5236128395B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666011e-171AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197119.14e-70B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-58Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLT1LAJ21e-157T1LAJ2_TRIUA; Uncharacterized protein
STRINGTRIUR3_01515-P11e-158(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.12e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]