PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01735-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 86aa    MW: 9659.81 Da    PI: 9.5786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01735-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-091762345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+ E + + +a + +G      W+++a+ mg ++++ q++ ++q
  TRIUR3_01735-P1 17 EWTKKENKMFEEALAYYGVSapnLWDKVASAMGGTKSAQQVRRHFQ 62
                     7*****************99**9**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.121065IPR017877Myb-like domain
SMARTSM007174.1E-71467IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-121672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-41662IPR009057Homeodomain-like
PfamPF002493.9E-81762IPR001005SANT/Myb domain
CDDcd001674.22E-61762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSGSSSRST SPSSDSEWTK KENKMFEEAL AYYGVSAPNL WDKVASAMGG TKSAQQVRRH  60
FQILVDDVES IEHGRIPFPK YKTRVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-18983275RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176377.15e-42protein RADIALIS-like 3
SwissprotQ1A1731e-21RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLT1LB443e-57T1LB44_TRIUA; Uncharacterized protein
STRINGTRIUR3_01735-P15e-58(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-23RAD-like 1