PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01739-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 80aa    MW: 9190.37 Da    PI: 8.9544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01739-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-10954345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G+g    W+++a+ mg ++++++++ ++q
  TRIUR3_01739-P1  9 EWSKKENKMFEEALAYYGMGapnLWEKVASAMGGTKSAEEVRRHFQ 54
                     7********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.062257IPR017877Myb-like domain
SMARTSM007175.4E-7659IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-12865IPR009057Homeodomain-like
PfamPF002499.1E-9955IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-5962IPR009057Homeodomain-like
CDDcd001670.00151254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSSPSSNSEW SKKENKMFEE ALAYYGMGAP NLWEKVASAM GGTKSAEEVR RHFQFLVDDV  60
KNIEHGRIPF PKYKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-20277377RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612032e-72AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176382.12e-45protein RADIALIS-like 5
SwissprotQ6NNN09e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLM7YU533e-53M7YU53_TRIUA; Uncharacterized protein
STRINGTRIUR3_01739-P15e-54(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-20RAD-like 1