PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01942-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 680aa    MW: 73928.4 Da    PI: 7.2457
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01942-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.3e-08585634147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E ellv+av++lG g+Wk + ++     + Rt  ++k++w ++
  TRIUR3_01942-P1 585 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFcdnEERTYVDLKDKWKNL 634
                      678999*****************************99**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.18E-7401474IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873406470IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.902.3E-4407474No hitNo description
CDDcd017690.00377410475No hitNo description
PROSITE profilePS5129416.171580639IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-10581636IPR009057Homeodomain-like
SuperFamilySSF466891.45E-12582637IPR009057Homeodomain-like
SMARTSM007171.5E-8584637IPR001005SANT/Myb domain
PfamPF002498.3E-6585634IPR001005SANT/Myb domain
CDDcd116604.59E-15586636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032204Biological Processregulation of telomere maintenance
GO:0042162Molecular Functiontelomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST  60
ESDQDGAEAS HNSDRIAVKS EQFDEAPQLN STALENDCSR GYTVGCDGIC ASLGQTSIRK  120
TEDLSTQNVA DTVEGSLIEK ADADNLLTQN IADAAAEPLI EKKPDVFAEG SLVSCTKPSL  180
LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQATPAIIGS LVDGNAAALH GLVDTMDLDI  240
KPSVLNSESS SGVHLGGHDN GHKASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL  300
SYKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFCGKKI SATRRRAQMQ RMLKTKKVVE  360
CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA SEGCNVKFII KSFNIPELSI  420
EVPENATVGS LKRIVMDAVT SKIEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG  480
FTLECEAKQD SRPSGLAPEE MDSAGPSVVN PLSKISYTPP FSRIKFEQPF ISCTLGDYPY  540
EGAAQVRSEI CQAIVPYGTS NPDALAIVPV VPRSRQRDFG QRRKRRPFSV AEVELLVEAV  600
ELLGFGRWKN VKNHAFCDNE ERTYVDLKDK WKNLVHTASI PPQLRRGRAI PPQDLLDRVL  660
AAQAYWTVHH AKRDEEEGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A6e-425566683113Telomere binding protein-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733770.0AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194084.10.0telomere-binding protein 1-like
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLM7YL880.0M7YL88_TRIUA; Telomere-binding protein 1
STRINGTRIUR3_01942-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-53TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]