PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_03202-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 308aa MW: 34351.6 Da PI: 7.1677

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_03202-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.2	7.6e-20	64	188	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................tekerrtraet 58 Yn+ A ++GFs+++++s+ + r++e +k++f+C+k k++ ++ ++k+ ++++ + TRIUR3_03202-P1 64 HYNSCALRMGFSIKMNTSRWTARTNELIKQQFCCNKFKKPKADDGGaetppvldpipdpksvnsdeemeeeppifaeeeagtsKKKKCKRETIK 157 69********************************999999988899******************************877777789999 PP FAR1 59 rtgCkaklkvkkekdgkwevtkleleHnHela 90 +t+Ck k+ vk+ dg+wevt+++ +HnH+l+ TRIUR3_03202-P1 158 QTECKVKMLVKLI-DGRWEVTHFVRDHNHPLV 188 ***********.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-17	64	188	IPR004330	FAR1 DNA binding domain
Gene3D	G3DSA:4.10.60.10	5.0E-4	151	163	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	5.0E-4	285	306	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSESHTLDDT GTEANVPGPT RTELEAGAVD RAVQVEEGED EAGSQPMEPY VGMRFDSLQI 60 AKDHYNSCAL RMGFSIKMNT SRWTARTNEL IKQQFCCNKF KKPKADDGGA ETPPVLDPIP 120 DPKSVNSDEE MEEEPPIFAE EEAGTSKKKK CKRETIKQTE CKVKMLVKLI DGRWEVTHFV 180 RDHNHPLVNK PSLSKYLRSH QGISPDEKEF LRILYNCNLT TGDYNPSTMT GRATAGDRDG 240 PTAPLEAASL AQASDDFVPR DPPRSTTKGR AKSRRYKSAL ELHPKKKNKC SQCQSTEHTA 300 GVCPQRLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194049.1	1e-139	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M7Z850	0.0	M7Z850_TRIUA; Uncharacterized protein
STRING	TRIUR3_03202-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-12	FAR1-related sequence 5