PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03219-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 26504.8 Da    PI: 5.6317
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03219-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.79.8e-261059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+   rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl  ++s
  TRIUR3_03219-P1 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS 59
                     8*********************************************9986 PP
2K-box51.25.2e-181111902099
            K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +++ L++++ +    +Rh+ Ge+L+ Ls+ eLqq+e++Le++l+++  +K++ +++qi++lq+k  +l een++L++++ 
  TRIUR3_03219-P1 111 KYDSLNEQLAEASLGLRHMRGEELDGLSVGELQQMEKNLETGLQRVLCTKDRQFMQQISDLQQKGTQLAEENMRLKNQMH 190
                      4677777777777889************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.235161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-25171IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-23323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.872105195IPR002487Transcription factor, K-box
PfamPF014861.2E-16111189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARERRAIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS  60
RHLDTSGQFT TIYVCVICSM NEIIDKYSTH SKNLGKSDQQ PAIDLNLEHC KYDSLNEQLA  120
EASLGLRHMR GEELDGLSVG ELQQMEKNLE TGLQRVLCTK DRQFMQQISD LQQKGTQLAE  180
ENMRLKNQMH EVPTASTAVA EAENVVPEDA HSSDSVMTAV HSGSSQDNDD GSDISLKLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15160160MEF2C
5f28_B1e-15160160MEF2C
5f28_C1e-15160160MEF2C
5f28_D1e-15160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028920.0AM502892.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM24B (WM24B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169474.11e-143MADS-box transcription factor 55-like
SwissprotQ69TG51e-114MAD55_ORYSJ; MADS-box transcription factor 55
TrEMBLM7Z5521e-176M7Z552_TRIUA; MADS-box transcription factor 55
STRINGTRIUR3_03219-P11e-177(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]