PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03600-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 179aa    MW: 18744.9 Da    PI: 8.4389
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03600-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.54.4e-13731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr +L YPrGApsV+Ca+C++V
  TRIUR3_03600-P1  7 CHGCRSVLLYPRGAPSVCCAVCHAV 31
                     ************************9 PP
2zf-LSD142.69.8e-144670125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C gCrtlL+Y+r+A+ VRC++CdtV
  TRIUR3_03600-P1 46 CVGCRTLLMYTRNATTVRCSCCDTV 70
                     ************************9 PP
3zf-LSD1491e-1587111125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+t+L+YP+GA+sV+Ca+C+++
  TRIUR3_03600-P1  87 CGQCQTVLMYPYGASSVKCAICNFI 111
                      ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.9E-12432IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-134372IPR005735Zinc finger, LSD1-type
PfamPF069439.4E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-1284113IPR005735Zinc finger, LSD1-type
PfamPF069435.3E-1487111IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTSAPPPGME MAQLICVGCR TLLMYTRNAT  60
TVRCSCCDTV NLARPAPPVN SIAHVNCGQC QTVLMYPYGA SSVKCAICNF ITNIGMNTVR  120
PLPPTMHAPN GISYSVPSTS APSAQSQNVT VVVENPMTVD DKGKLVSNVV VGVTSGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1355800.0JX135580.1 Triticum aestivum cultivar Suwon11 LOL2 (LOL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198652.11e-125protein LOL2-like
SwissprotQ2QMB31e-99LOL2_ORYSJ; Protein LOL2
TrEMBLM8AIZ71e-125M8AIZ7_TRIUA; Uncharacterized protein
STRINGTRIUR3_03600-P11e-126(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.19e-54lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]