PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_03699-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 964aa MW: 109301 Da PI: 9.037

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_03699-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.7	7.2e-22	143	233	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+++A++vGF vr+ ++k ++ + +++++Cs +g+r+e+ k+ + +++r+r++tr+gC+a++ vk+ + ++++++++ ++HnH ++p TRIUR3_03699-P1 143 FYKAFAHRVGFGVRVGQQKVV--DNVVESKRYMCSSQGFRSEKVKRnvkAANKKRKREVTRCGCDAHIYVKRCSGNTYKIHSMIEQHNHGFVP 233 9*************99888..889************9999787788999********************************9875 PP
2	FAR1	73.6	4.3e-23	276	366	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF+vr+ ++k +++ + ++f+Cs+eg+r+++ k+ +e+++r+ ++tr+gC+a+++vk + ++++v++l ++HnH l+ TRIUR3_03699-P1 276 EFYKSYARHCGFKVRVGQHKLL-NKEVVQFKRFMCSREGFRSDRGKDpsSERKKRNVKVTRCGCNAHIVVKWCSGNTYKVSSLIEHHNHGLV 366 6**************99887.777799*************987888889999*****************************986 PP
3	FAR1	72.5	9.6e-23	414	506	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+++GFsvr+ + k +n+ + +++f+Cs+eg+r+e+ +++r+ r++tr+gC+a++ vk+ +d+k+++t+ ++HnH ++p TRIUR3_03699-P1 414 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSEKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHHNHGFVP 506 6**************97766.8999************9887777889999********************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	143	233	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.8E-20	276	366	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.0E-20	414	506	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-21	627	716	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	895	944	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-5	897	936	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-6	919	946	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
RAARPGPAPS TSIPRRRRRR SDGPSCSNRR PTLEEEKLAF RVSCRLLGSP QGLRHTGALD 60 PTIRAFSADS GDDPAMESVT IVQAQPFAGI NSPLPLDEGR LGTPERDATS MPQPCSTSTS 120 ESAEEWKPAL GMTFEGLEAV EAFYKAFAHR VGFGVRVGQQ KVVDNVVESK RYMCSSQGFR 180 SEKVKRNVKA ANKKRKREVT RCGCDAHIYV KRCSGNTYKI HSMIEQHNHG FVPPDKLHLI 240 RSNRGASEKE KVIPECDEAL RPSLGMAFEG LSSAEEFYKS YARHCGFKVR VGQHKLLNKE 300 VVQFKRFMCS REGFRSDRGK DPSSERKKRN VKVTRCGCNA HIVVKWCSGN TYKVSSLIEH 360 HNHGLVLPDR VTKSMRRVSE KAKNKLSSSL APECDEALKP SVGMVFEDIG SVEEFYKSYA 420 HHCGFSVRVG QRKLLNNEVV QWKRFMCSRE GFRSEKCMGV DDPSRKRKVR KVTRCGCDAR 480 IIVKRCTDNK YKITSWIEHH NHGFVPPDKC HLIRSNRQLS DKVKPTVSTH CKASTGTSQA 540 NKPDHVSEGR SDNVGCTKRD LQKYHHDLCS KIKNEDAQIF VAQLCRKQQE DSAFFFDCDV 600 DDQGMLVHVF WADATSRKNY IYFSDMLTFD CTNTLNQHGM IFAPFTGTNH HLQSVFFGAA 660 FLADEKIESY AWLFQTFLRA MGGVSPKTIV TRENDRMKAA ISNVLPATTH RLCMLEMLER 720 MPEKVEPSLR NNPLFQTRMN ECVLGSETVF EFESKWESII SDFGLQGNQW LAERYSARER 780 WILAYSTDIH LSGILRSTAW SKSAKSFFNC FINQKLSLVE FWLRFEAALE CQRQEESNAD 840 HTSAHTTPQL ITPWGLEKHG SVVFTHEVFE RFQEEIVAAR DHCVVEDMAQ TEGVKTVAIG 900 GDDSDKVREV RWDAITMTAN CSCKLFESVG IPCRHINLVL RSSKLNELPS SCVLKRWQKS 960 AKFG

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

RAARPGPAPS TSIPRRRRRR SDGPSCSNRR PTLEEEKLAF RVSCRLLGSP QGLRHTGALD  60
PTIRAFSADS GDDPAMESVT IVQAQPFAGI NSPLPLDEGR LGTPERDATS MPQPCSTSTS  120
ESAEEWKPAL GMTFEGLEAV EAFYKAFAHR VGFGVRVGQQ KVVDNVVESK RYMCSSQGFR  180
SEKVKRNVKA ANKKRKREVT RCGCDAHIYV KRCSGNTYKI HSMIEQHNHG FVPPDKLHLI  240
RSNRGASEKE KVIPECDEAL RPSLGMAFEG LSSAEEFYKS YARHCGFKVR VGQHKLLNKE  300
VVQFKRFMCS REGFRSDRGK DPSSERKKRN VKVTRCGCNA HIVVKWCSGN TYKVSSLIEH  360
HNHGLVLPDR VTKSMRRVSE KAKNKLSSSL APECDEALKP SVGMVFEDIG SVEEFYKSYA  420
HHCGFSVRVG QRKLLNNEVV QWKRFMCSRE GFRSEKCMGV DDPSRKRKVR KVTRCGCDAR  480
IIVKRCTDNK YKITSWIEHH NHGFVPPDKC HLIRSNRQLS DKVKPTVSTH CKASTGTSQA  540
NKPDHVSEGR SDNVGCTKRD LQKYHHDLCS KIKNEDAQIF VAQLCRKQQE DSAFFFDCDV  600
DDQGMLVHVF WADATSRKNY IYFSDMLTFD CTNTLNQHGM IFAPFTGTNH HLQSVFFGAA  660
FLADEKIESY AWLFQTFLRA MGGVSPKTIV TRENDRMKAA ISNVLPATTH RLCMLEMLER  720
MPEKVEPSLR NNPLFQTRMN ECVLGSETVF EFESKWESII SDFGLQGNQW LAERYSARER  780
WILAYSTDIH LSGILRSTAW SKSAKSFFNC FINQKLSLVE FWLRFEAALE CQRQEESNAD  840
HTSAHTTPQL ITPWGLEKHG SVVFTHEVFE RFQEEIVAAR DHCVVEDMAQ TEGVKTVAIG  900
GDDSDKVREV RWDAITMTAN CSCKLFESVG IPCRHINLVL RSSKLNELPS SCVLKRWQKS  960
AKFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	19	RRRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161160.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	T1LGB2	0.0	T1LGB2_TRIUA; Uncharacterized protein
STRING	TRIUR3_03699-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1-related sequence 5