PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03719-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 744aa    MW: 84779.3 Da    PI: 7.2574
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03719-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.5e-2141127290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       Y++Y++++GFsvrk k+++   ++ i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++  HnH+la
  TRIUR3_03719-P1  41 LYCDYGHRIGFSVRKGKQSYFIGTRDIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMVRFRVDEKGRWTVIRFVPLHNHQLA 127
                      7********************9999****************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1941127IPR004330FAR1 DNA binding domain
PfamPF105514.5E-32249342IPR018289MULE transposase domain
PROSITE profilePS509669.038530566IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-6531563IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-5541568IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MRKNGEVGKK GEDHRNALSR KEATEELIGC MVHSEEEAYK LYCDYGHRIG FSVRKGKQSY  60
FIGTRDIRTK DYYCSKEGLK YDEPVTEANF NRPDTRTNCK AMVRFRVDEK GRWTVIRFVP  120
LHNHQLAKPG ERHLLRSAKS FAVGKSGVID PAESAESHAG NGSSDRTVGD ISEPPGYTTR  180
DCYNHDNVQN ITLIGAGDSQ SLVSYFKRRT NEEGMFYWDV QVDQEGRMTN FFFRDGKSRS  240
DYDCFGDAVI FDTTYRTNKY SLICAPFVGV NHHWHNVVFG FAFLLDDSTA SYVWLFKSFL  300
ESMGGRSPKS IFTDQDEAIM QAAEQVFPNT QHCFSYWHIL KNAQSHLGTV NTSQAFQNMF  360
MKCMQGCDTE MELQESWDAM LDEYKLQDND WLNGLYKFHN RWCSVFNKDT FDGGINSSQW  420
GEVSNNILTG VADESTSITR FALLLEKVVK TLRRNESEED FRCSQTAPVR AIKHSTVLKQ  480
AAESYTHRMY KLFEAEFLDG CGATSCHENS CGGSLLRFEI TMQGRGSKMW TVLLDTSTME  540
ISCGCGKFER MGLLCSHALK AFSLQNVDMV PEKYILKRWT KDARRSMYNL SQEDSTQQEC  600
TEAELAYRNR AMQYAYNLAL KSQELEEARK ILWDSLETGE KALEVFFEMR NLHAQSAKDA  660
STREKKKKKI PKGPSTKKAK QALASSSAAP VLTAQTSEQQ FQSAQDANGN ATIGRSYYYQ  720
VFPTPMQPNQ IFMHPNTMPV CAPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3711050.0AK371105.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195842.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLT1LGD10.0T1LGD1_TRIUA; Uncharacterized protein
STRINGTRIUR3_03719-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-97FAR1-related sequence 5