PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03730-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 52aa    MW: 5614.58 Da    PI: 11.4069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03730-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161048240
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     ri n+  r  tf kR +g+lKKA EL vLCd++  v++f
  TRIUR3_03730-P1 10 RIANDVSRRATFGKRSAGLLKKARELAVLCDVDLGVLVF 48
                     89**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-15152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.058152IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-19151IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-183852IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MGRGRVEIRR IANDVSRRAT FGKRSAGLLK KARELAVLCD VDLGVLVFDG AG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754641e-56AK375464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154090.12e-27MADS-box transcription factor 29-like
SwissprotQ2QQA35e-18MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A3B6RML87e-26A0A3B6RML8_WHEAT; Uncharacterized protein
TrEMBLN1R5A29e-26N1R5A2_AEGTA; MADS-box transcription factor 29
TrEMBLT1LGE18e-27T1LGE1_TRIUA; Uncharacterized protein
STRINGEMT333821e-26(Aegilops tauschii)
STRINGTRIUR3_03730-P11e-27(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.26e-19AGAMOUS-like 16