PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03736-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 257aa    MW: 28017.6 Da    PI: 8.7128
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03736-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.2e-1119921699
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                     l +p   a   gg+k   ++l l d sg+sW++++ +r++ +   l++ Wk+ v+++g++++D++vF    r  +++ +v ++r+
  TRIUR3_03736-P1 19 LLFPPLQA---GGDK---QDLLLHDISGNSWNMEHAHRGTMR--SLSRYWKNLVREKGVNVRDIIVFV---RcPDGRILVDLRRA 92
                     44444444...5553...47***************5555555..59**********************...55899999999986 PP
2Auxin_resp27.61.2e-10108191283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                      ++ a ++s+F+v+Y+P  +   Fvv+++ v +a ++ + v m +++    +++ + +++G  +gv +   +  v      WrsL+
  TRIUR3_03736-P1 108 SQLAIQGSAFTVTYYPGRGVESFVVPRAVVDAAAERDWEVDMPVRLLPK-DEVVHVQQQGSASGVIArgtIGAVVPGATTWRSLQ 191
                      6778899**************************************9765.55555555666655543000334444566777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.432193IPR003340B3 DNA binding domain
CDDcd100174.17E-8877No hitNo description
Gene3DG3DSA:2.40.330.104.4E-11892IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-11992IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-82792IPR003340B3 DNA binding domain
PfamPF065072.6E-14107191IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPQADWARSY LHVPKECELL FPPLQAGGDK QDLLLHDISG NSWNMEHAHR GTMRSLSRYW  60
KNLVREKGVN VRDIIVFVRC PDGRILVDLR RATPVNRDWG GQEVAQASQL AIQGSAFTVT  120
YYPGRGVESF VVPRAVVDAA AERDWEVDMP VRLLPKDEVV HVQQQGSASG VIARGTIGAV  180
VPGATTWRSL QVDWDGSTSS APAATAVNKW QVEPEGSRDA KRRRLSDTVP PVASTAQGGI  240
KLFGRTLVPE GGSGSTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220224KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191290.11e-156auxin response factor 13-like
TrEMBLM7YTR30.0M7YTR3_TRIUA; Auxin response factor
STRINGTRIUR3_03736-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4962222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.16e-14auxin response factor 16