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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | TRIUR3_03751-P1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 200aa MW: 22368.2 Da PI: 10.9543 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 11.8 | 0.00073 | 138 | 157 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F + +L++H++++
TRIUR3_03751-P1 138 CSQCGKEF-KPQDLHSHMQSC 157
9*******.*********997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF06136 | 5.6E-15 | 20 | 75 | IPR010369 | Protein of unknown function DUF966 |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 200 aa Download sequence Send to blast |
MEKAMDSYNK GGGAGEVRRI NVVYFLSRGG RTDHPHLFRV NHLHRSGVRL RDVKRWLSEV 60 RGKDMPENFS WAYKRGGSDD DEDRRDTTPV CPGMDGCGIH MNRKVRLRRS GKDKAKPEGG 120 KRPGAVAAAH KPASLPLCSQ CGKEFKPQDL HSHMQSCRGF RARMRSSNGT RGVDRNHTRS 180 ARADDSSPER TSTGLLLTQS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG670306 | 2e-68 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020150913.1 | 4e-75 | uncharacterized protein LOC109736104 | ||||
| TrEMBL | M8A9D2 | 1e-145 | M8A9D2_TRIUA; Uncharacterized protein | ||||
| STRING | TRIUR3_03751-P1 | 1e-146 | (Triticum urartu) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP10794 | 12 | 13 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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