PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_03864-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 149aa MW: 17122.4 Da PI: 7.9167

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_03864-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.8	7.7e-23	24	112	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f +Y+ ++GF+vrk+++ ks+++g+it+ +fvCs+eg r++++ + ++ +r raetrt+Ck ++ v+ ++ + +evt+++leHnH l+ TRIUR3_03864-P1 24 FCVQYGGHIGFDVRKRNTIKSRTDGTITSCRFVCSNEGIRRKSQID-HEPKRIRAETRTNCKVRMIVSFDRvAKFFEVTEVDLEHNHLLQ 112 7789*************************************999.99999*************999999**********885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-19	24	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MGSIGNRIPE VGMWFRNSDE AWEFCVQYGG HIGFDVRKRN TIKSRTDGTI TSCRFVCSNE 60 GIRRKSQIDH EPKRIRAETR TNCKVRMIVS FDRVAKFFEV TEVDLEHNHL LQLPQTCHLL 120 ASQRKISDVQ ALEIETTDDS GIMPKASHD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168926.1	2e-79	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1LGR6	1e-108	T1LGR6_TRIUA; Uncharacterized protein
STRING	TRIUR3_03864-P1	1e-108	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1-related sequence 5