PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_03984-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 551aa MW: 59618.4 Da PI: 7.93

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_03984-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	25.8	3.5e-08	395	466	40	106
TCP 40 GfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssgkaaksaa..kskksqksaas 106 G+ ++sk ++WLl++a+++i++l+ ++++++ + +a++++ + ss +++ a+ ++ +++ aas TRIUR3_03984-P1 395 GLSQPSKVVDWLLNAAQHEIDKLPPLQFPPHDDDllfSAHHHHHHLQPTSSMTSMAMAPpfSHATATAAAAS 466 7889***************************44334422222222222222222222220222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48537	3.4E-76	26	287	IPR008947	Phospholipase C/P1 nuclease domain
CDD	cd11010	1.00E-80	26	289	No hit	No description
Gene3D	G3DSA:1.10.575.10	2.7E-89	26	291	IPR008947	Phospholipase C/P1 nuclease domain
Pfam	PF02265	1.6E-80	26	289	IPR003154	S1/P1 nuclease

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006308	Biological Process	DNA catabolic process
GO:0010150	Biological Process	leaf senescence
GO:0080187	Biological Process	floral organ senescence
GO:0090502	Biological Process	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0000014	Molecular Function	single-stranded DNA endodeoxyribonuclease activity
GO:0003676	Molecular Function	nucleic acid binding
GO:0016891	Molecular Function	endoribonuclease activity, producing 5'-phosphomonoesters
GO:0043765	Molecular Function	T/G mismatch-specific endonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MASSGAFMVA AVLGLVLASA PAARAWSTEG HMLTCQIAQD LLEPAAAQAV KNLLPEEAGG 60 DLSAMCVWPD QVRHWYKYRW TSPLHFIDTP DKACTFDYAR DCHDPSGAKD MCVAGAVANF 120 TSQLMHYKQG SADRKYNLTE ALLFLSHFMG DIHQPMHVGF TSDMGGNSVN LRWFKHKSNL 180 HHVWDREIIL TVLAERYGKD MAAFRKDLQH NITKGSWSDE SSWKDCADLM SCPTKYATES 240 IGLACKWGYD GVHDGDTLSE DYFGSRLPIV TRRIAQGGVR LAMFLNRALG DHKAHSRDVA 300 APDGVSFRRD QCRRPWGRPP EVRTGGGRQQ GPAGGGGGLA ALVVVHGVAD RARVPRVRGQ 360 GPAQQGEDRQ GAARPPGAPL RAHGHPALRP PGPPGLSQPS KVVDWLLNAA QHEIDKLPPL 420 QFPPHDDDLL FSAHHHHHHL QPTSSMTSMA MAPPFSHATA TAAAASMMVV DSDKAAHAHD 480 GGGDLKGFMS LSNSLGLVND AGAAMPTLAA AQARSYHHHY APQGISSRWP FMRGKKSSPE 540 GAPALNHALE V

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MASSGAFMVA AVLGLVLASA PAARAWSTEG HMLTCQIAQD LLEPAAAQAV KNLLPEEAGG  60
DLSAMCVWPD QVRHWYKYRW TSPLHFIDTP DKACTFDYAR DCHDPSGAKD MCVAGAVANF  120
TSQLMHYKQG SADRKYNLTE ALLFLSHFMG DIHQPMHVGF TSDMGGNSVN LRWFKHKSNL  180
HHVWDREIIL TVLAERYGKD MAAFRKDLQH NITKGSWSDE SSWKDCADLM SCPTKYATES  240
IGLACKWGYD GVHDGDTLSE DYFGSRLPIV TRRIAQGGVR LAMFLNRALG DHKAHSRDVA  300
APDGVSFRRD QCRRPWGRPP EVRTGGGRQQ GPAGGGGGLA ALVVVHGVAD RARVPRVRGQ  360
GPAQQGEDRQ GAARPPGAPL RAHGHPALRP PGPPGLSQPS KVVDWLLNAA QHEIDKLPPL  420
QFPPHDDDLL FSAHHHHHHL QPTSSMTSMA MAPPFSHATA TAAAASMMVV DSDKAAHAHD  480
GGGDLKGFMS LSNSLGLVND AGAAMPTLAA AQARSYHHHY APQGISSRWP FMRGKKSSPE  540
GAPALNHALE V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3sng_A	1e-146	26	290	1	266	nuclease
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Endonuclease that can use RNA, single-stranded and double-stranded DNA as substrates (PubMed:23620482). Hydrolyzes single-stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence. {ECO:0000269\|PubMed:10631260, ECO:0000269\|PubMed:17651368, ECO:0000269\|PubMed:18603613, ECO:0000269\|PubMed:23620482}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Directly induced by NAC92 during senescence onset. {ECO:0000269\|PubMed:23340744}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248565	0.0	AK248565.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf87p12, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167969.1	0.0	endonuclease 1
Swissprot	Q9SXA6	1e-148	ENDO1_ARATH; Endonuclease 1
TrEMBL	M7YZY9	0.0	M7YZY9_TRIUA; Nuclease PA3
STRING	TRIUR3_03984-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	3e-09	TCP domain protein 17

Publications ? help Back to Top
Pérez-Amador MA, et al. Identification of BFN1, a bifunctional nuclease induced during leaf and stem senescence in Arabidopsis. Plant Physiol., 2000. 122(1): p. 169-80 [PMID:10631260] Yang B, et al. Purification, cloning, and characterization of the CEL I nuclease. Biochemistry, 2000. 39(13): p. 3533-41 [PMID:10736152] Tung CW,Dwyer KG,Nasrallah ME,Nasrallah JB Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth. Plant Physiol., 2005. 138(2): p. 977-89 [PMID:15894741] Triques K, et al. Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea. Plant J., 2007. 51(6): p. 1116-25 [PMID:17651368] Triques K, et al. Mutation detection using ENDO1: application to disease diagnostics in humans and TILLING and Eco-TILLING in plants. BMC Mol. Biol., 2008. 9: p. 42 [PMID:18433472] Farage-Barhom S,Burd S,Sonego L,Perl-Treves R,Lers A Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes. J. Exp. Bot., 2008. 59(12): p. 3247-58 [PMID:18603613] Farage-Barhom S, et al. Localization of the Arabidopsis senescence- and cell death-associated BFN1 nuclease: from the ER to fragmented nuclei. Mol Plant, 2011. 4(6): p. 1062-73 [PMID:21665915] Lesniewicz K,Karlowski WM,Pienkowska JR,Krzywkowski P,Poreba E The plant s1-like nuclease family has evolved a highly diverse range of catalytic capabilities. Plant Cell Physiol., 2013. 54(7): p. 1064-78 [PMID:23620482] Sakamoto W,Takami T Nucleases in higher plants and their possible involvement in DNA degradation during leaf senescence. J. Exp. Bot., 2014. 65(14): p. 3835-43 [PMID:24634485]