PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_03990-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 138aa MW: 15723.3 Da PI: 7.9985

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_03990-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.3	1.7e-10	98	134	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+t+t+ ql++Le+ F + n +ps++++++++++l TRIUR3_03990-P1 98 RQRWTPTQMQLQILENIFDQgNGTPSKQKIKDITAEL 134 89***************99***********998 PP
2	Wus_type_Homeobox	55.8	1.1e-18	97	138	2	43
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyG 43 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G TRIUR3_03990-P1 97 ARQRWTPTQMQLQILENIFDQGNGTPSKQKIKDITAELSQHG 138 789**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-5	92	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-6	97	135	IPR009057	Homeodomain-like
Pfam	PF00046	2.9E-8	98	134	IPR001356	Homeobox domain
CDD	cd00086	6.03E-4	98	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MSVVCSVWVI GFIFALQQKL FLARGVSQSW LRHCVKVMTD EQIEVLRKQI SIYATICEQL 60 IEMHRALTTH QDSIAGMSLD NLYCDPLMVH GGHKITARQR WTPTQMQLQI LENIFDQGNG 120 TPSKQKIKDI TAELSQHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363822	1e-117	AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08.
GenBank	AK365419	1e-117	AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06.
GenBank	AK365714	1e-117	AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	2e-67	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-65	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M7YTI6	1e-98	M7YTI6_TRIUA; WUSCHEL-related homeobox 8
STRING	TRIUR3_03990-P1	2e-99	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-50	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]