PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05031-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 597aa    MW: 68605.3 Da    PI: 8.0948
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05031-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.73.5e-271196188
             FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
                     +fYn+YA ++GFsvrks+s ks  ++ + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++ +k ++ +k+++++++ +HnH+
  TRIUR3_05031-P1 11 EFYNRYAGHIGFSVRKSSSDKS-ADNITRSRTFVCSREGFRKDKKGA-NEVKRPRPETRIGCPARMIIKITSYNKYRIAEFVADHNHQ 96
                     6********************9.555699**************9999.99*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-241196IPR004330FAR1 DNA binding domain
PfamPF105515.1E-26220314IPR018289MULE transposase domain
PROSITE profilePS509669.916488535IPR007527Zinc finger, SWIM-type
PfamPF044347.5E-5488532IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-4510537IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MEFDNEDKAY EFYNRYAGHI GFSVRKSSSD KSADNITRSR TFVCSREGFR KDKKGANEVK  60
RPRPETRIGC PARMIIKITS YNKYRIAEFV ADHNHQPAPP STMHMLRSQR VLTEVQTTEC  120
NSSEDSTTPS RFSGGSLGQQ AGAFRNVNFL PADYRSSLCS KRTKNMQPGD AGGVVKYLQS  180
MQLNNPSFFY AVQLDEDDKL TNIFWADSKS RVDFSYFSDV VCLDTTYKIN AHGRPLTLFL  240
GVNHHKQISI FGAALLYDES VESFKWLFDT FKIATDGKQP KTILTDQSIA ASAAISAVWP  300
STIHCLCPWQ VYQNTVKHLN HIFQGSKTFA KDFSRCVYDY EDEEGFLVGW RTMLEKYDLR  360
NNEWLHKLFE DRDKWASAYN RHVFTADING SLQLECVSNV LRKYLSPQFD FLSFFKHYER  420
VLDEHRYAEL QADFHASQSF PRIPPSKMLK QAANIYTPVV FEKFRREFEM FVDSVIYSCG  480
ESGTASDYRV AVTDRPGEHY VRFDSSDLSV ACSCKKFESM GIQCCHVLKV LDFRNIKELP  540
QKYLMRRWTK DAKSADRGNQ EFLSDGALQT PSSRLNVPVP IINQPQSHLN NDHDHVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2493010.0AK249301.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33i23, mRNA sequence.
GenBankAK2518850.0AK251885.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf133l23, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197216.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLT1LJU40.0T1LJU4_TRIUA; Uncharacterized protein
STRINGTRIUR3_05031-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5