PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_05076-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 266aa MW: 30382.8 Da PI: 7.1663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_05076-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.9e-06	240	263	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 ++++ K +Ka++L +++eY+k+Lq TRIUR3_05076-P1 240 QGRHHKTNKASMLDETIEYLKQLQ 263 78999******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF143113	1.19E-28	20	162	No hit	No description
Pfam	PF00956	1.3E-22	71	162	IPR002164	Nucleosome assembly protein (NAP)
Gene3D	G3DSA:4.10.280.10	2.1E-5	242	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MPISVRFRHA WSLCVRAVMD KLQSLAGQHA DVLESLSPNV RTRVEFLRGI QISPTYVLMS 60 EARNVNAKSP SQHDEIEAKF FEERAALEAK YRKLYEPLYA KTYDIVHCKW SCGAKGVPDF 120 WLTALKTNEV MTEEIQERDE PVLKYLKDIK WSRIDDPKGF KLLTARAAAE SGSKRTCAAE 180 LHNLSDKVVS RFPVVNRFSA ILALFSRLLI ACLLDWGAAA EEQDQREDEG VAEPDTQFQQ 240 GRHHKTNKAS MLDETIEYLK QLQLQV

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373392	3e-61	AK373392.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029I15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179921.1	1e-65	nucleosome assembly protein 1;1 isoform X2
Swissprot	Q5VND6	8e-59	NAP1A_ORYSJ; Nucleosome assembly protein 1;1
TrEMBL	M8A9P7	0.0	M8A9P7_TRIUA; Nucleosome assembly protein 1-like 1
STRING	TRIUR3_05076-P1	0.0	(Triticum urartu)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]