PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05289-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 306aa    MW: 33354.3 Da    PI: 7.1416
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05289-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-17141195256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le  F+++++++ e++  LA++l+L  rqV vWFqNrRa+ k
  TRIUR3_05289-P1 141 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSCLANRLSLRPRQVEVWFQNRRARTK 195
                      678899***********************************************98 PP
2HD-ZIP_I/II117.48.2e-38141229189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rlskeq+++LE sF+e+++L+ e+K+ la++L l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++dal++en++L++ev+eLr+
  TRIUR3_05289-P1 141 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSCLANRLSLRPRQVEVWFQNRRARTKLKQTEADCERLKRCCDALARENRKLQREVAELRA 229
                      69*************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-17117198IPR009057Homeodomain-like
SuperFamilySSF466891.75E-17129198IPR009057Homeodomain-like
PROSITE profilePS5007116.358137197IPR001356Homeobox domain
SMARTSM003892.5E-12139201IPR001356Homeobox domain
PfamPF000461.1E-14141195IPR001356Homeobox domain
CDDcd000863.88E-14141198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
SMARTSM003407.8E-15197240IPR003106Leucine zipper, homeobox-associated
PfamPF021835.9E-11197229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELELSLGDL PAPVKASTMP ASATCQGEDH DDLALGLRVT ATQRADQDNQ RISIETAEGE  60
EDSDEACREL PVRASPFRQA SSQTASANSR GFDVNAAVPV DGRASIARSL PPPSMHMEVP  120
VAQGVDEEGS EDEDNGGGRV RKKLRLSKEQ SAFLEGSFKE HSTLTLEQKS CLANRLSLRP  180
RQVEVWFQNR RARTKLKQTE ADCERLKRCC DALARENRKL QREVAELRAS RAPYPLYNLN  240
HHLSGFSTVL PAGSSCDATT RSTVSAASSP GLSPMSTLFP GRPHFGPFTV VSHPVPPLRR  300
QPSATL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144RVRKKLR
2189197RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494280.0AK249428.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf26g21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185729.10.0homeobox-leucine zipper protein HOX7-like isoform X1
SwissprotA2X6745e-86HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLM7Z8830.0M7Z883_TRIUA; Homeobox-leucine zipper protein HOX7
STRINGTRIUR3_05289-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-44homeobox from Arabidopsis thaliana