PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_05541-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 323aa MW: 36351 Da PI: 6.7081

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_05541-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.1e-14	179	264	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k t+ +++ + +++pk+f+ e+ ++ + ++l de ++ + + + ++++l+kGW++F+ ++L +gD +vF+l++r++f++v TRIUR3_05541-P1 179 FVKPVTHDCASRAAVMTIPKHFI-EYL--PAHDEAVVLVDEADDEFHMLY----NARHHFLRKGWRGFAAHHDLADGDCLVFQLTERTKFKFV 264 6677766667777999*****.662..334457***********....66779***********************998888665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.06E-15	176	263	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.72E-17	177	263	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.2E-14	177	263	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.5E-12	179	264	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.039	179	269	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-8	179	267	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MATAEVNGVG LEFLSDPVDR FPLPDLGSDH LMTTGEPTSA QTESTTESSM GDVGDPSIRM 60 ELALKPAGEA LSLTPVDPQP STGKEDAEVP GWTRRDETSE TFEWVFNEFI RMIGGKHPQT 120 ILTDNWCRRS ARPRGPASSG GPGPGAPQRD YQRAAAVAAA KQKAEELQRR IHGIRWPAFV 180 KPVTHDCASR AAVMTIPKHF IEYLPAHDEA VVLVDEADDE FHMLYNARHH FLRKGWRGFA 240 AHHDLADGDC LVFQLTERTK FKFVREAISS LMLEIRLQLQ FRHVESSHSW SRQRKKGIAS 300 WLRSTPDWWV PIPDRRPGWD LRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T1LL65	0.0	T1LL65_TRIUA; Uncharacterized protein
STRING	TRIUR3_05541-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-09	B3 family protein