PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05542-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 405aa    MW: 45511.6 Da    PI: 8.9997
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05542-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-16295388199
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k++t+  +++ + +++p +f+e+        +  ++l +e   ++++ ++ +k++++ +l+kGW+eF+  ++L+ gD +vF+l+++  f  +
  TRIUR3_05542-P1 295 FVKTMTHVCASRAKPMMIPTHFIEHLpA----HDEAVVLVNEADVEFKMLCSASKQGRHRYLSKGWREFAVHHDLENGDCLVFHLIESAMF--K 382
                      889999999999999********55532....3457***************999999999************************9986555..9 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v +fr+
  TRIUR3_05542-P1 383 VYIFRA 388
                      999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511972.33E-71998No hitNo description
Gene3DG3DSA:2.60.120.3301.7E-93389IPR027443Isopenicillin N synthase-like
Gene3DG3DSA:2.40.330.109.7E-19291389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20291389IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-23293387No hitNo description
PfamPF023621.3E-14295388IPR003340B3 DNA binding domain
SMARTSM010198.8E-12295389IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111295389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MACSVRHCLR HRSCRLVVSG ASQQPTGPGR SKTLDDLHEY TSRSKRIKYD ILRAMAKLLE  60
LDEHSLVHQF SDRALTYARF NYYPPCPRTL PLTMQHIADH VTILAREGKN YSWSRGRAGR  120
GRPRGCPAGS WAGAIWRTCA TLRGGRAASW APATSIVQGG DCPVEWREVA VQEDGVGAMV  180
TQGRDAPGRG EADSFLICDQ NCVIVEGRGT GRFRSVGLIK RKAPGPGELR RSGRVAGLPE  240
QPNYLKGAQQ RDYEEVYAAY DARIWKGPTD EQRAAAVAKA EELRRRIHRI RRPAFVKTMT  300
HVCASRAKPM MIPTHFIEHL PAHDEAVVLV NEADVEFKML CSASKQGRHR YLSKGWREFA  360
VHHDLENGDC LVFHLIESAM FKVYIFRANP DYESDQTSDD SEDEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT1LL660.0T1LL66_TRIUA; Uncharacterized protein
STRINGTRIUR3_05542-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-15B3 family protein