PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05688-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 102aa    MW: 11343.5 Da    PI: 4.6764
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05688-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.18.5e-136653796
            NF-YB 37 ecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
                     e +  fi ++++ a+d c+  kr+tin++d++ al ++ f ++vepl++ l+++r  +++
  TRIUR3_05688-P1  6 ESARIFIHYLSATANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALEEFRSRNAA 65
                     66778**************************************************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.29E-20397IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-25395IPR009072Histone-fold
PfamPF008081.5E-6440IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAAFAESARI FIHYLSATAN DVCKDGKRQT INAEDVFKAL DEIEFPEFVE PLRTALEEFR  60
SRNAARKPAS GKKQSENKRK LDKEAVPEEQ NGAADEANAG ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3710681e-122AK371068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2124A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188630.16e-60neurofilament heavy polypeptide-like isoform X1
RefseqXP_020188631.14e-60DNA polymerase epsilon subunit 3-like isoform X2
TrEMBLA0A3B6HXJ73e-66A0A3B6HXJ7_WHEAT; Uncharacterized protein
TrEMBLA0A446RB993e-66A0A446RB99_TRITD; Uncharacterized protein
TrEMBLM7Z8985e-67M7Z898_TRIUA; DNA polymerase epsilon subunit 3
STRINGTraes_4AL_6566FA47B.15e-67(Triticum aestivum)
STRINGTRIUR3_05688-P18e-68(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-27nuclear factor Y, subunit B11