PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05886-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 531aa    MW: 59786.8 Da    PI: 6.9774
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05886-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.2e-12441241295
                      HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +++ l++p + +++   +   + s  ++le+++g +++v++    k g ++lt+GW++Fv+an++++gD ++F + grs+f+ ++k
  TRIUR3_05886-P1  44 NKDFLCIPWEVTRQLrnM--IAHSEPIKLETPDGHVYSVEF---VKFGLITLTTGWRHFVDANHIRQGDPITFVYCGRSTFKVHFK 124
                      456799999999888533..455667***************...5666899******************************88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.19433127IPR003340B3 DNA binding domain
SMARTSM010192.6E-837127IPR003340B3 DNA binding domain
CDDcd100173.13E-1138123No hitNo description
SuperFamilySSF1019369.22E-1538125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-1239123IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-1044124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-7195306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-7200305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-9423529IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-9423529IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-7428529No hitNo description
SMARTSM010190.012430531IPR003340B3 DNA binding domain
PROSITE profilePS508637.866430531IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDTDEFFNPG GAGTAGDGCD CGDCEERRHD HGRTKHFVLF TSDNKDFLCI PWEVTRQLRN  60
MIAHSEPIKL ETPDGHVYSV EFVKFGLITL TTGWRHFVDA NHIRQGDPIT FVYCGRSTFK  120
VHFKGTSSGH KNSLPSSQQP PNIFRAIPPR DHHVLNEQVV PDPAHVRTST DFGYTMFPGT  180
CLTKAQEKKV LELADSSMRS EIPLHVAAMN KRNANEDYYV YIPLGLLDNF EEGITATTIQ  240
LEAHGNGMVY FVAASKQRDD QIILESELSH FVASLRIQDN DLLVFRSMRK DRLEVFVLDP  300
IGCEKTCFAM GNSSNAREVR EDPVEIVDPP QHTVIDLSSD DDEVVEKGTA TSRGEQRPLR  360
GYRAEAQKMA STSSRRTKSG HKADKSKKAS LEAPMSNKPY ISTSGTKLTR RQEEKVEEKV  420
QAIGSEFPVF VKVMNERDVW SPKRLSFSLE YASACRLPLE QTHVILGLEG SNMKWSSRMV  480
AQKHKDVRHI SSFWKDLVLL AGMKVGDICL VELADRSSES LTMTVHLIRK L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170063.11e-180B3 domain-containing protein Os12g0591400-like isoform X2
TrEMBLT1LM330.0T1LM33_TRIUA; Uncharacterized protein
STRINGTRIUR3_05886-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4189123