PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05950-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 146aa    MW: 16305.8 Da    PI: 7.0729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05950-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS121.41.1e-37514597234
             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                         ++I++av+g +++Hi+ ++is G+QWp Ll  La+R++gpp++RiTg++ p++g   +  +ee g+rL+++A+++gvpf+f++ +a++ ed
  TRIUR3_05950-P1   5 FSTNTIYKAVAGRRKLHIVHYGISTGFQWPDLLGLLANREGGPPEVRITGINTPQPGpcPAALMEEAGHRLNNYASQFGVPFKFHA-IASKPED 97 
                      56789****************************************************999999***********************.79***** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvksl 234
                      ++ e+L+++p+E+l+V++ ++  +l+des++ +   +rd vLk+++++
  TRIUR3_05950-P1  98 VRAEDLHIDPDEVLVVSSLYEFRTLMDESLTFDMvsPRDMVLKTIRKM 145
                      ****************************98765555**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.8861146IPR005202Transcription factor GRAS
PfamPF035143.7E-355145IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
VGLLFSTNTI YKAVAGRRKL HIVHYGISTG FQWPDLLGLL ANREGGPPEV RITGINTPQP  60
GPCPAALMEE AGHRLNNYAS QFGVPFKFHA IASKPEDVRA EDLHIDPDEV LVVSSLYEFR  120
TLMDESLTFD MVSPRDMVLK TIRKMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-18412695218GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750621e-133AK375062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084L15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162692.12e-93scarecrow-like protein 34
TrEMBLT1LM941e-105T1LM94_TRIUA; Uncharacterized protein
STRINGTRIUR3_05950-P11e-105(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2273846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.15e-37SCARECROW-like 14