PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06267-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 374aa    MW: 41096.8 Da    PI: 4.6657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06267-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.7e-151359349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+n+  r  tf kRr g++K A  +S L++a+vav++  ++gk++ +
  TRIUR3_06267-P1 13 IQNDKDRDLTFYKRRSGLFKRATDISSLTGARVAVVLETNNGKMHSF 59
                     99*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-9162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.703363IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-9525IPR002100Transcription factor, MADS-box
CDDcd001201.84E-13662No hitNo description
SuperFamilySSF554552.09E-15772IPR002100Transcription factor, MADS-box
PfamPF003192.4E-161359IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPRKERRSGV AYIQNDKDRD LTFYKRRSGL FKRATDISSL TGARVAVVLE TNNGKMHSFG  60
TPLADPIVDA FLFGARTAVP SVDEATTARI GRLQNEVAQL DMENMSEEDK NQLSILRMKN  120
IQEENPGMVA NLIFTKEQDL GLEDLNKLFS ELSRVQKDIR FRLPPLHGRE DKTGGTCVAQ  180
DLQLPSVLPA DHLGTTHSLM QSSWPHNLSQ LQLPSDPLPP QPEQTPAPLF PMQAPQMFHS  240
APPSLAPHLA SHVQPIPNQV HEQTPPEELH VQNYESPCNI VQPQQNDANH DSTSGQNLEA  300
SALLGYSSGN ALSIDDPFNT EQWGYALSDQ SCYNSFLGMD AYLGSSGTDL GQSSMVNGGW  360
VDVSPSSTGQ DIDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160767.10.0floral homeotic protein APETALA 1-like
TrEMBLT1LN380.0T1LN38_TRIUA; Uncharacterized protein
STRINGTRIUR3_06267-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-11AGAMOUS-like 62