PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06411-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 87aa    MW: 9734.78 Da    PI: 5.691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06411-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-071763347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W++ E + + +a + +G      W+++a+  g ++++++++ ++q +
  TRIUR3_06411-P1 17 EWSKKENKMFEEALAYYGVSapnLWEKVASAGG-TKSAEEVRRHFQLL 63
                     7*****************99**9**********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5971064IPR017877Myb-like domain
SMARTSM007175.1E-51466IPR001005SANT/Myb domain
CDDcd001673.34E-51764No hitNo description
SuperFamilySSF466892.44E-111771IPR009057Homeodomain-like
PfamPF002492.9E-61762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-41770IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSGSSSQST SPNSDSEWSK KENKMFEEAL AYYGVSAPNL WEKVASAGGT KSAEEVRRHF  60
QLLIDDVDKI EHGCIPFPKY KTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-18984277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176377.19e-44protein RADIALIS-like 3
SwissprotF4JVB85e-22RADL1_ARATH; Protein RADIALIS-like 1
SwissprotQ6NNN03e-22RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLT1LNH62e-58T1LNH6_TRIUA; Uncharacterized protein
STRINGTRIUR3_06411-P13e-59(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-24RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]