PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07027-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 499aa    MW: 54195.3 Da    PI: 4.4923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07027-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.71.6e-10350376128
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAt 28 
                      k +++WtpeLH+rFv+aveqL G +kA 
  TRIUR3_07027-P1 350 KVKVDWTPELHRRFVQAVEQL-GLDKAA 376
                      5689*****************.888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-9348377IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-8350376IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MADDPWIINE WVKTVMPLGV LKMESFEDLL RSPARDPLPK ICQPDTEDRT CALCGQDEDF  60
NHIFSLEFLP KFYGDVPKKW LSVPGHEPTG YISRSSIYPP IEIAAIVKPA EIWSGFWCKD  120
YFQVNSFPSP PILRATYAEI GMLEVATLQS PNPAVFSLGD HHHVDVGFPE ATVEEDDFLL  180
DYIDFSTCDM PFFHVDDGDD ILPDLEVDPT ELLAEFADEP ATTTVLSPAA EPAPDGCETH  240
HGDEAKTAVE TDLPAEMDME LPEGKGETKG LMSSSEEKDV KQQHDNKNNK NNNNNIVGDE  300
VCSAVTTDDS SAAVGSENSK SSASAEGHSK MTSKPASAAA ATKSPHGRRK VKVDWTPELH  360
RRFVQAVEQL GLDKAAARKW GPQAVTQCVP PPMPPAAMMQ RFAAPPMPGM VPHPMYRPIP  420
PPPSPVPQSN KVAGLQLQLD AHPSKESIDA AIGDVLVKPW LPLPLGLKPP SLDSVMSELH  480
KQGIPKVPPA ATTNCGGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187877.11e-126probable transcription factor GLK2
SwissprotQ5NAN57e-40GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLM7Z4G60.0M7Z4G6_TRIUA; Putative transcription factor GLK2
STRINGTRIUR3_07027-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-12GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]