PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07102-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 430aa    MW: 47464.6 Da    PI: 7.3528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07102-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67e-161202061099
                      HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + +s+rl+lp kf++    g  k++  +++l+   +g r W+vk+  +   g+++l++GW++F++a++L+ g f+vF++dg  ++ l+vkvf+ 
  TRIUR3_07102-P1 120 N-SSSRLRLPDKFTRVLldG-GKPQ--EVKLREaGHGrRFWDVKVVLDAD-GHMYLGRGWEQFARAHDLRLGYFLVFSFDG--DAVLTVKVFDV 206
                      4.5567********777844.4344..6777774555699*****65555.5778***********************887..55569999985 PP
2B337.83.4e-122833571286
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                      +++ l +p +f  +hg+ ++++++l++   +g+sW v l+++ k g+     ++ GW +F+ +n L egD++ F+  +
  TRIUR3_07102-P1 283 QEQYLNVPVDFQLAHGYAERSKVELRM---RGKSWLVHLKHNPKTGGrprASFRYGWHQFCVDNALGEGDTCFFRALR 357
                      556789999**99**999888766664...67*******995555555679***********************9554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.662110207IPR003340B3 DNA binding domain
CDDcd100171.17E-20111205No hitNo description
Gene3DG3DSA:2.40.330.101.4E-17113209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18113209IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-17113207IPR003340B3 DNA binding domain
PfamPF023621.5E-13120206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-20268358IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-9270360No hitNo description
SMARTSM010190.011270364IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391272375IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12272357IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-9283357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MCEPIAVRPF LTSPFLGGGV KKSIPEEESR EARRCIYHRC TFERRGRGRR RKEEEEGFAT  60
WHGIHGIVGS FFFLFLPLPL ALPSSQAPVS PPSQPAAAER GPGETGEMEG FEFFQIILDN  120
SSSRLRLPDK FTRVLLDGGK PQEVKLREAG HGRRFWDVKV VLDADGHMYL GRGWEQFARA  180
HDLRLGYFLV FSFDGDAVLT VKVFDVSMCR RHYQHDGDTR IKEGGFCIWP GSGSSSDGDS  240
GSSNASDGGS GGNNWSLAEM DVEDGPTGQF SAMLRKCNLG MKQEQYLNVP VDFQLAHGYA  300
ERSKVELRMR GKSWLVHLKH NPKTGGRPRA SFRYGWHQFC VDNALGEGDT CFFRALRQGS  360
AGGGGEDHLL KVEHDSEAAG WCSAASIVCC IAIPSKRDDA DPELKNVGCS GALRALHGFA  420
MGFPSNFLPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14352RRGRGRRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168607.11e-162B3 domain-containing protein Os03g0212300-like
TrEMBLT1LQD40.0T1LQD4_TRIUA; Uncharacterized protein
STRINGTRIUR3_07102-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-13B3 family protein