PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07169-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 431aa    MW: 46673.9 Da    PI: 7.4774
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07169-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA33.94.2e-11139169131
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 
                      C +C++ +Tp+ R+gp g  tLCnaCG+ y+
  TRIUR3_07169-P1 139 CLHCKAVETPQRRSGPMGRGTLCNACGVWYK 169
                      99*************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.2E-4133184IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.46133169IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-9136169No hitNo description
Gene3DG3DSA:3.30.50.105.0E-10138169IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-7138169No hitNo description
PfamPF003202.7E-8139169IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MATAEEGEGG EPPGLGRGRC PRFRRSEATR GMAGGGGVGG KEDGGTEPLL LSVLALPATA  60
LPAVVSRLEA AVPRKARSYL PRNVPSAWWS LRIPFLPPLP PAGKKKEDGR RFPRTQRVQV  120
APSLDPGTAD KPPKRLKRCL HCKAVETPQR RSGPMGRGTL CNACGVWYKP DLGARGAWGH  180
LPGQKVGHGE DASQDRSCAS ATAGDELLAL RVLGSTFVDR RIDGAEGGLH RLRHAGRLLP  240
EYRPVASPTF VPTKHANTHR KVLQLHRTRQ SNDEHPSPLP ADSVTNLPPI RNELPTTSMA  300
GLASEDPTDA PGYTDNPINV PSSLDSLLLD GPSAPLICSS GDYLEFVRMM DVCSLFNTVD  360
EMIKEEIVAV TPPTIVLEDD DEEEMVDAGN ADAVEMVAWV TEPSCSTMPL EVNDYQRQSY  420
YRSRRLQARR A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550520.0AK355052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152088.13e-87uncharacterized protein LOC109737355 isoform X1
TrEMBLM7ZPG40.0M7ZPG4_TRIUA; GATA transcription factor 9
STRINGTRIUR3_07169-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-13GATA transcription factor 9