PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08114-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 183aa    MW: 20335 Da    PI: 6.0366
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08114-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.3e-19103136134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  TRIUR3_08114-P1 103 CTHCQIDKTPQWRAGPLGPKTLCNACGVRYKSGR 136
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.6E-1697147IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.33297133IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-15101160No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14101134IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.72E-16102159No hitNo description
PfamPF003201.5E-16103137IPR000679Zinc finger, GATA-type
PROSITE patternPS003440103128IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASGRFMEEM MREHEQSLLE ATCGGLFDHI EDLLDFPKED SAEDVLLLDA PEPECIAESN  60
SQPKKKKKAK RPTPPVTSDA EGDADYEEGS GGAALAPGEV RRCTHCQIDK TPQWRAGPLG  120
PKTLCNACGV RYKSGRLFPE YRPAASPTFV PAIHSNSHKK VVEMRQKVEP KGDDLLQFIR  180
RRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536491e-170AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24.
GenBankAK3566851e-170AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165199.12e-76GATA transcription factor 11-like
RefseqXP_020165203.12e-76GATA transcription factor 11-like
SwissprotQ6DBP83e-40GAT11_ARATH; GATA transcription factor 11
TrEMBLM7ZQ061e-133M7ZQ06_TRIUA; GATA transcription factor 11
STRINGTRIUR3_08114-P11e-134(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-40GATA family protein